Knee Segmentation and Registration Toolkit (KSRT)
Automatic Cartilage Segmentation and Cartilage Thickness Analysis
Software Release: 1.0
https://bitbucket.org/marcniethammer/ksrt

Junpyo Hong
Liang Shan
Marc Niethammer

January 22, 2015
Contents
1 License
2 Overview
3 Analysis Approaches
 3.1 Cartilage Segmentation
 3.2 Cartilage Thickness Computation
 3.3 Statistical Thickness Analysis
4 KSRT Software
 4.1 Overview of the Software Pipeline
 4.2 Image Data Format
 4.3 Building the Software
 4.4 Supported Platform
5 Tutorial: Pfizer Longitudinal Study Dataset
 5.1 PLS Dataset
 5.2 Running the Software Pipeline
 5.3 Longitudinal Segmentation
 5.4 Cartilage Thickness Computation
 5.5 Statistical Analysis on the Thickness
References