TOC RNA Secondary Structure Prediction The problem of predicting the RNA Secondary Structure without pseudoknots is well-resolved 1-6 , with time O(n3) and space ...
Here are some things that we have written in MATLAB for working with protein structures. PdbTools read pdb files, do Ramachandran plots, rmsd, etc. Idiosyncratic, ...
Main.AndrewLeaverFay 21 Feb 2005 Rotamer Energy Calculation Problem: minimize the number of additions and table-look-ups in calculating the pair interaction energy ...
This is a place to jot down project ideas, and link to WikiWords for projects where the ideas are more fleshed out. OptimizingRosetta for ideas specifically pertaining ...
Running OptE on UNC clusters: OptEOnTopsail OptEOnBass HbondPapers ResearchIdeasJotPad Previous work by Chris Sheldahl: Main.ChrisProgress Implemented ideas to ImproveHbonds ...
TOC Planned meetings 6 Dec: Glenn Butterfoss Brian Kuhlmann, more on protein voids Past meetings 22 Nov: Craig Bennetts Jack Snoeyink, estimating protein voids We ...
Phil Bradley has done some preliminary work on including explicit waters into rosetta. I will begin by looking at his work with the goal of being able to present ...
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