Misc papers on hydrogen bonds

Ask me for any papers that aren't already linked/attached. Link back to: RosettaHydrogenBonds

Survey

E. N. BAKER and R. E. HUBBARD

HYDROGEN BONDING IN GLOBULAR PROTEINS Prog Biophys. molec. Biol., Vol. 44, pp. 97 179, 1984 0079 6107/84 $0.00+.50

Classic survey - easy to read.

Identifying H bonds

Revealing Non-Covalent Interactions

Erin R. Johnson, Paula Mori-Sanchez, Shahar Keinan Aron J. Cohen, and Weitao Yang

Paper draft from Duke suggests that finding minima in density and the gradient of density is a way to reveal non-covalent interactions.

Statistical Atlases

Ian McDonald^? and Janet M Thornton

Atlas of Side-Chain and Main-Chain Hydrogen Bonding WWW Edition December 1994, original edition April 1993 http://prowl.rockefeller.edu/aainfo/hbonds.html

Computations

MM4 calculation

Charles H. Langley and Norman L. Allinger Molecular Mechanics (MM4) and ab Initio Study of Amide-Amide and Amide-Water Dimers J. Phys. Chem. A 2003, 107, 5208-5216

Actually gives complete function description. Uses full angles and lone pairs.

-- JackSnoeyink - 21 Jul 2009