Misc papers on hydrogen bonds
Ask me for any papers that aren't already linked/attached. Link back to:
RosettaHydrogenBonds
Survey
E. N. BAKER and R. E. HUBBARD
HYDROGEN BONDING IN GLOBULAR PROTEINS
Prog Biophys. molec. Biol., Vol. 44, pp. 97 179, 1984 0079 6107/84 $0.00+.50
Classic survey - easy to read.
Identifying H bonds
Revealing Non-Covalent Interactions
Erin R. Johnson, Paula Mori-Sanchez, Shahar Keinan
Aron J. Cohen, and Weitao Yang
Paper draft from Duke suggests that finding minima in density and the gradient of density is a way to reveal non-covalent interactions.
Statistical Atlases
Ian McDonald? and Janet M Thornton
Atlas of Side-Chain and Main-Chain Hydrogen Bonding
WWW Edition December 1994, original edition April 1993
http://prowl.rockefeller.edu/aainfo/hbonds.html
Computations
MM4 calculation
Charles H. Langley and Norman L. Allinger
Molecular Mechanics (MM4) and ab Initio Study of Amide-Amide and Amide-Water
Dimers
J. Phys. Chem. A 2003, 107, 5208-5216
Actually gives complete function description.
Uses full angles and lone pairs.
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JackSnoeyink - 21 Jul 2009
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